IL_4V8P_015
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UUGAAAC*GUGGAUA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_015 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.085
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8P|1|A1|U|401
4V8P|1|A1|U|402
4V8P|1|A1|G|403
4V8P|1|A1|A|404
4V8P|1|A1|A|405
4V8P|1|A1|A|406
4V8P|1|A1|C|407
*
4V8P|1|B2|G|16
4V8P|1|B2|U|17
4V8P|1|B2|G|18
4V8P|1|B2|G|19
4V8P|1|B2|A|20
4V8P|1|B2|U|21
4V8P|1|B2|A|22
Current chains
- Chain A1
- 26S RRNA
- Chain B2
- 5.8S RRNA
Nearby chains
- Chain BC
- RPL4
- Chain BQ
- RPL17
- Chain BX
- 60S RIBOSOMAL PROTEIN L32
Coloring options: