IL_4V8P_047

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

4V8P|1|A1|G|1010

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_047 not in the Motif Atlas

Homologous match to IL_8C3A_040

Geometric discrepancy: 0.1458

The information below is about IL_8C3A_040

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

4V8P|1|A1|A|1009
4V8P|1|A1|G|1010
4V8P|1|A1|U|1011
*
4V8P|1|A1|A|1126
4V8P|1|A1|U|1127

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AT

RPL29

Chain BP

60S RIBOSOMAL PROTEIN L21

Chain BV

60S RIBOSOMAL PROTEIN L7