IL_4V8P_048
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- AGGUAA*UAAAUU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_048 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.1927
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8P|1|A1|A|1018
4V8P|1|A1|G|1019
4V8P|1|A1|G|1020
4V8P|1|A1|U|1021
4V8P|1|A1|A|1022
4V8P|1|A1|A|1023
*
4V8P|1|A1|U|1078
4V8P|1|A1|A|1079
4V8P|1|A1|A|1080
4V8P|1|A1|A|1081
4V8P|1|A1|U|1082
4V8P|1|A1|U|1083
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AX
- RPL18A
- Chain B3
- 5S ribosomal RNA; 5S rRNA
- Chain BH
- 60S RIBOSOMAL PROTEIN L10
- Chain BM
- 60S RIBOSOMAL PROTEIN L5
- Chain BP
- 60S RIBOSOMAL PROTEIN L21
- Chain BV
- 60S RIBOSOMAL PROTEIN L7
Coloring options: