IL_4V8P_049

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_049 not in the Motif Atlas

Homologous match to IL_8C3A_042

Geometric discrepancy: 0.1705

The information below is about IL_8C3A_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

4V8P|1|A1|A|1023
4V8P|1|A1|A|1024
*
4V8P|1|A1|U|1076
4V8P|1|A1|U|1077
4V8P|1|A1|U|1078

Current chains

Chain A1

26S RRNA

Nearby chains

Chain B3

5S ribosomal RNA; 5S rRNA

Chain BH

60S RIBOSOMAL PROTEIN L10

Chain BM

60S RIBOSOMAL PROTEIN L5

Chain BP

60S RIBOSOMAL PROTEIN L21