IL_4V8P_056

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AUU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_056 not in the Motif Atlas

Homologous match to IL_5TBW_046

Geometric discrepancy: 0.1114

The information below is about IL_5TBW_046

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V8P|1|A1|A|1147
4V8P|1|A1|U|1148
4V8P|1|A1|U|1149
*
4V8P|1|A1|A|1163
4V8P|1|A1|C|1164
4V8P|1|A1|U|1165

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AT

RPL29

Chain B3

5S ribosomal RNA; 5S rRNA

Chain BV

60S RIBOSOMAL PROTEIN L7