IL_4V8P_063

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

4V8P|1|A1|U|1235

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_063 not in the Motif Atlas

Homologous match to IL_8C3A_056

Geometric discrepancy: 0.1796

The information below is about IL_8C3A_056

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V8P|1|A1|G|1234
4V8P|1|A1|U|1235
4V8P|1|A1|G|1236
*
4V8P|1|A1|C|1323
4V8P|1|A1|C|1324

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AK

UBIQUITIN-60S RIBOSOMAL PROTEIN L40

Chain AX

RPL18A

Chain B3

5S ribosomal RNA; 5S rRNA

Chain BE

60S RIBOSOMAL PROTEIN L9