IL_4V8P_066
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CCUAGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 4V8P|1|A1|A|1417
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_066 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.1634
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
4V8P|1|A1|C|1414
4V8P|1|A1|C|1415
4V8P|1|A1|U|1416
4V8P|1|A1|A|1417
4V8P|1|A1|G|1418
4V8P|1|A1|A|1419
4V8P|1|A1|A|1420
4V8P|1|A1|G|1421
*
4V8P|1|A1|U|1441
4V8P|1|A1|G|1442
4V8P|1|A1|G|1443
4V8P|1|A1|A|1444
4V8P|1|A1|G|1445
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain B2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- RPL4
- Chain BS
- RPL26
- Chain BX
- 60S RIBOSOMAL PROTEIN L32
Coloring options: