IL_4V8P_073

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_073 not in the Motif Atlas

Geometric match to IL_4LFB_041

Geometric discrepancy: 0.243

The information below is about IL_4LFB_041

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

4V8P|1|A1|G|1643
4V8P|1|A1|A|1644
4V8P|1|A1|C|1645
*
4V8P|1|A1|G|1849
4V8P|1|A1|C|1850

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AP

RPL38

Chain B2

5.8S ribosomal RNA; 5.8S rRNA