IL_4V8P_077

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CA*UUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_077 not in the Motif Atlas

Geometric match to IL_4WF9_007

Geometric discrepancy: 0.1995

The information below is about IL_4WF9_007

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

4V8P|1|A1|C|1694
4V8P|1|A1|A|1695
*
4V8P|1|A1|U|1802
4V8P|1|A1|U|1803
4V8P|1|A1|G|1804

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AL

RPL34

Chain BO

RPL19