IL_4V8P_084

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_084 not in the Motif Atlas

Geometric match to IL_5TBW_076

Geometric discrepancy: 0.0724

The information below is about IL_5TBW_076

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

4V8P|1|A1|G|1922
4V8P|1|A1|G|1923
4V8P|1|A1|A|1924
4V8P|1|A1|A|1925
*
4V8P|1|A1|U|2331
4V8P|1|A1|C|2332

Current chains

Chain A1

26S RRNA

Nearby chains

Chain BB

RIBOSOMAL PROTEIN L3

Chain BJ

RPL23