IL_4V8P_090

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

4V8P|1|A1|C|2192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_090 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.1097

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

4V8P|1|A1|C|2191
4V8P|1|A1|C|2192
4V8P|1|A1|A|2193
4V8P|1|A1|G|2194
*
4V8P|1|A1|C|2240
4V8P|1|A1|G|2241

Current chains

Chain A1

26S RRNA

Nearby chains

Chain BA

RPL8

Chain GA

RPL8