IL_4V8P_093

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_093 not in the Motif Atlas

Geometric match to IL_4PDB_001

Geometric discrepancy: 0.2722

The information below is about IL_4PDB_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_70784.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

4V8P|1|A1|G|2201
4V8P|1|A1|A|2202
4V8P|1|A1|A|2203
4V8P|1|A1|U|2204
4V8P|1|A1|G|2205
*
4V8P|1|A1|C|2230
4V8P|1|A1|G|2231
4V8P|1|A1|C|2232

Current chains

Chain A1

26S RRNA

Nearby chains

Chain BA

RPL8