IL_4V8P_095

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_095 not in the Motif Atlas

Geometric match to IL_5TBW_089

Geometric discrepancy: 0.1319

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

4V8P|1|A1|G|2271
4V8P|1|A1|C|2272
*
4V8P|1|A1|G|2302
4V8P|1|A1|C|2303
4V8P|1|A1|A|2304
4V8P|1|A1|U|2305

Current chains

Chain A1

26S RRNA

Nearby chains

Chain H1

Large subunit ribosomal RNA; LSU rRNA