IL_4V8P_105

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GU*AAU

Length

5 nucleotides

Bulged bases

4V8P|1|A1|A|2615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_105 not in the Motif Atlas

Homologous match to IL_8C3A_107

Geometric discrepancy: 0.3156

The information below is about IL_8C3A_107

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4V8P|1|A1|G|2603
4V8P|1|A1|U|2604
*
4V8P|1|A1|A|2614
4V8P|1|A1|A|2615
4V8P|1|A1|U|2616

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AC

60S RIBOSOMAL PROTEIN L36A

Chain AT

RPL29

Chain BH

60S RIBOSOMAL PROTEIN L10

Chain BP

60S RIBOSOMAL PROTEIN L21