IL_4V8P_111

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GCU*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_111 not in the Motif Atlas

Geometric match to IL_5TBW_103

Geometric discrepancy: 0.0928

The information below is about IL_5TBW_103

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V8P|1|A1|G|2812
4V8P|1|A1|C|2813
4V8P|1|A1|U|2814
*
4V8P|1|A1|G|2851
4V8P|1|A1|A|2852
4V8P|1|A1|U|2853

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AT

RPL29

Chain BH

60S RIBOSOMAL PROTEIN L10