IL_4V8P_117

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

4V8P|1|A1|A|2929, 4V8P|1|A1|C|2930

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_117 not in the Motif Atlas

Homologous match to IL_5TBW_109

Geometric discrepancy: 0.0671

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V8P|1|A1|C|2869
4V8P|1|A1|U|2870
*
4V8P|1|A1|A|2928
4V8P|1|A1|A|2929
4V8P|1|A1|C|2930
4V8P|1|A1|G|2931

Current chains

Chain A1

26S RRNA

Nearby chains

Chain BB

RIBOSOMAL PROTEIN L3

Chain BJ

RPL23