IL_4V8P_118

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UU*AACG

Length

6 nucleotides

Bulged bases

4V8P|1|A1|C|2899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_118 not in the Motif Atlas

Homologous match to IL_5TBW_111

Geometric discrepancy: 0.123

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

4V8P|1|A1|U|2879
4V8P|1|A1|U|2880
*
4V8P|1|A1|A|2897
4V8P|1|A1|A|2898
4V8P|1|A1|C|2899
4V8P|1|A1|G|2900

Current chains

Chain A1

26S RRNA

Nearby chains

Chain AK

UBIQUITIN-60S RIBOSOMAL PROTEIN L40

Chain BB

RIBOSOMAL PROTEIN L3

Chain BE

60S RIBOSOMAL PROTEIN L9

Chain BI

60S RIBOSOMAL PROTEIN L13A