IL_4V8P_119

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_119 not in the Motif Atlas

Homologous match to IL_8C3A_120

Geometric discrepancy: 0.168

The information below is about IL_8C3A_120

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V8P|1|A1|G|2906
4V8P|1|A1|A|2907
4V8P|1|A1|U|2908
*
4V8P|1|A1|A|2914
4V8P|1|A1|C|2915
4V8P|1|A1|C|2916

Current chains

Chain A1

26S RRNA

Nearby chains

Chain BB

RIBOSOMAL PROTEIN L3

Chain BJ

RPL23