IL_4V8P_129
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GAGCG*UUAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_129 not in the Motif Atlas
- Geometric match to IL_3IGI_002
- Geometric discrepancy: 0.2002
- The information below is about IL_3IGI_002
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
4V8P|1|A1|G|3189
4V8P|1|A1|A|3190
4V8P|1|A1|G|3191
4V8P|1|A1|C|3192
4V8P|1|A1|G|3193
*
4V8P|1|A1|U|3217
4V8P|1|A1|U|3218
4V8P|1|A1|A|3219
4V8P|1|A1|A|3220
4V8P|1|A1|C|3221
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AE
- RPL6
- Chain AF
- RPL14
- Chain BI
- 60S RIBOSOMAL PROTEIN L13A
Coloring options: