IL_4V8P_171

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAGCAAU*AUGGC

Length

12 nucleotides

Bulged bases

4V8P|1|D1|C|433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78399.1

Basepair signature

cWW-cWW-L-cWW-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V8P|1|D1|G|430
4V8P|1|D1|A|431
4V8P|1|D1|G|432
4V8P|1|D1|C|433
4V8P|1|D1|A|434
4V8P|1|D1|A|435
4V8P|1|D1|U|436
*
4V8P|1|D1|A|646
4V8P|1|D1|U|647
4V8P|1|D1|G|648
4V8P|1|D1|G|649
4V8P|1|D1|C|650

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CX

60S RIBOSOMAL PROTEIN L32

Chain DH

RPL35A