IL_4V8P_186

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAUAG*CGUCC

Length

10 nucleotides

Bulged bases

4V8P|1|D1|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06171.1

Basepair signature

cWW-tHW-L-tHS-cWW

Number of instances in this motif group

2

Unit IDs

4V8P|1|D1|G|704
4V8P|1|D1|A|705
4V8P|1|D1|U|706
4V8P|1|D1|A|707
4V8P|1|D1|G|708
*
4V8P|1|D1|C|721
4V8P|1|D1|G|722
4V8P|1|D1|U|723
4V8P|1|D1|C|724
4V8P|1|D1|C|725

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CC

RPL4

Chain CK

60S RIBOSOMAL PROTEIN L27A

Chain CL

RIBOSOMAL PROTEIN L15

Chain DU

RPL13