IL_4V8P_204

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GCGAAU*AAAC

Length

10 nucleotides

Bulged bases

4V8P|1|D1|G|1027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75892.1

Basepair signature

cWW-tWH-cSH-L-cWS-cWW

Number of instances in this motif group

23

Unit IDs

4V8P|1|D1|G|1025
4V8P|1|D1|C|1026
4V8P|1|D1|G|1027
4V8P|1|D1|A|1028
4V8P|1|D1|A|1029
4V8P|1|D1|U|1030
*
4V8P|1|D1|A|1072
4V8P|1|D1|A|1073
4V8P|1|D1|A|1074
4V8P|1|D1|C|1075

Current chains

Chain D1

26S RRNA

Nearby chains

Chain C3

5S ribosomal RNA; 5S rRNA

Chain CH

60S RIBOSOMAL PROTEIN L10

Chain CM

60S RIBOSOMAL PROTEIN L5

Chain CP

60S RIBOSOMAL PROTEIN L21