IL_4V8P_226

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

ACAAG*CGU

Length

8 nucleotides

Bulged bases

4V8P|1|D1|A|1587, 4V8P|1|D1|A|1588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_27833.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

4V8P|1|D1|A|1585
4V8P|1|D1|C|1586
4V8P|1|D1|A|1587
4V8P|1|D1|A|1588
4V8P|1|D1|G|1589
*
4V8P|1|D1|C|1604
4V8P|1|D1|G|1605
4V8P|1|D1|U|1606

Current chains

Chain D1

26S RRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain CA

RPL8

Chain CF

RPL7A

Chain CL

RIBOSOMAL PROTEIN L15

Chain CR

RPL23A