IL_4V8P_232

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UUAAC*GGCAGA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64611.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

4V8P|1|D1|U|1718
4V8P|1|D1|U|1719
4V8P|1|D1|A|1720
4V8P|1|D1|A|1721
4V8P|1|D1|C|1722
*
4V8P|1|D1|G|1772
4V8P|1|D1|G|1773
4V8P|1|D1|C|1774
4V8P|1|D1|A|1775
4V8P|1|D1|G|1776
4V8P|1|D1|A|1777

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CO

RPL19

Chain DL

RPL34

Chain DP

RPL38