IL_4V8P_260

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CAG*CGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V8P|1|D1|C|2655
4V8P|1|D1|A|2656
4V8P|1|D1|G|2657
*
4V8P|1|D1|C|2675
4V8P|1|D1|G|2676
4V8P|1|D1|U|2677
4V8P|1|D1|A|2678
4V8P|1|D1|G|2679

Current chains

Chain D1

26S RRNA

Nearby chains

Chain C3

5S ribosomal RNA; 5S rRNA

Chain CD

60S RIBOSOMAL PROTEIN L11

Chain CM

60S RIBOSOMAL PROTEIN L5

Chain CP

60S RIBOSOMAL PROTEIN L21