IL_4V8P_288

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UGUAAG*CUGAG

Length

11 nucleotides

Bulged bases

4V8P|1|D1|G|3325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78834.1

Basepair signature

cWW-tSH-L-R-L-L-cWW

Number of instances in this motif group

2

Unit IDs

4V8P|1|D1|U|3290
4V8P|1|D1|G|3291
4V8P|1|D1|U|3292
4V8P|1|D1|A|3293
4V8P|1|D1|A|3294
4V8P|1|D1|G|3295
*
4V8P|1|D1|C|3323
4V8P|1|D1|U|3324
4V8P|1|D1|G|3325
4V8P|1|D1|A|3326
4V8P|1|D1|G|3327

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CB

RIBOSOMAL PROTEIN L3

Chain CT

RPL24