IL_4V8P_299

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_299 not in the Motif Atlas

Homologous match to IL_5J7L_357

Geometric discrepancy: 0.1515

The information below is about IL_5J7L_357

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

4V8P|1|E3|C|28
4V8P|1|E3|C|29
*
4V8P|1|E3|G|48
4V8P|1|E3|A|49
4V8P|1|E3|A|50
4V8P|1|E3|G|51

Current chains

Chain E3

5S RRNA

Nearby chains

Chain ED

60S RIBOSOMAL PROTEIN L11

Chain EM

60S RIBOSOMAL PROTEIN L5