IL_4V8P_300

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AUCCC*GAACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_300 not in the Motif Atlas

Geometric match to IL_4V9F_104

Geometric discrepancy: 0.1037

The information below is about IL_4V9F_104

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.11

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

9

Unit IDs

4V8P|1|E3|A|32
4V8P|1|E3|U|33
4V8P|1|E3|C|34
4V8P|1|E3|C|35
4V8P|1|E3|C|36
*
4V8P|1|E3|G|41
4V8P|1|E3|A|42
4V8P|1|E3|A|43
4V8P|1|E3|C|44
4V8P|1|E3|U|45

Current chains

Chain E3

5S RRNA

Nearby chains

Chain ED

60S RIBOSOMAL PROTEIN L11

Chain EM

60S RIBOSOMAL PROTEIN L5

Chain F1

Large subunit ribosomal RNA; LSU rRNA