IL_4V8P_325

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UAC*GG

Length

5 nucleotides

Bulged bases

4V8P|1|F1|A|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_325 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.2418

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

4V8P|1|F1|U|484
4V8P|1|F1|A|485
4V8P|1|F1|C|486
*
4V8P|1|F1|G|493
4V8P|1|F1|G|494

Current chains

Chain F1

26S RRNA

Nearby chains

Chain EK

60S RIBOSOMAL PROTEIN L27A

Chain FU

RPL13