IL_4V8P_337
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 4V8P|1|F1|A|958, 4V8P|1|F1|G|962
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28684.1
- Basepair signature
- cWW-R-tHW-tHW-tWW-cWW
- Number of instances in this motif group
- 12
Unit IDs
4V8P|1|F1|G|830
4V8P|1|F1|A|831
4V8P|1|F1|A|832
4V8P|1|F1|A|833
4V8P|1|F1|G|834
*
4V8P|1|F1|C|956
4V8P|1|F1|U|957
4V8P|1|F1|A|958
4V8P|1|F1|G|959
4V8P|1|F1|U|960
4V8P|1|F1|A|961
4V8P|1|F1|G|962
4V8P|1|F1|C|963
Current chains
- Chain F1
- 26S RRNA
Nearby chains
- Chain EC
- RPL4
- Chain EK
- 60S RIBOSOMAL PROTEIN L27A
- Chain EL
- RIBOSOMAL PROTEIN L15
- Chain FA
- RIBOSOMAL PROTEIN L37
- Chain FU
- RPL13
Coloring options: