IL_4V8P_357

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGCCCAAA*UG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12582.1

Basepair signature

cWW-L-L-L-cSH-L-cWW

Number of instances in this motif group

17

Unit IDs

4V8P|1|F1|C|1200
4V8P|1|F1|G|1201
4V8P|1|F1|C|1202
4V8P|1|F1|C|1203
4V8P|1|F1|C|1204
4V8P|1|F1|A|1205
4V8P|1|F1|A|1206
4V8P|1|F1|A|1207
*
4V8P|1|F1|U|1352
4V8P|1|F1|G|1353

Current chains

Chain F1

26S RRNA

Nearby chains

Chain EI

60S RIBOSOMAL PROTEIN L13A

Chain EV

60S RIBOSOMAL PROTEIN L7

Chain FH

RPL35A

Chain FX

RPL18A