IL_4V8P_368

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AGAAC*GUU

Length

8 nucleotides

Bulged bases

4V8P|1|F1|U|1540

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71145.1

Basepair signature

cWW-cSW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

4V8P|1|F1|A|1527
4V8P|1|F1|G|1528
4V8P|1|F1|A|1529
4V8P|1|F1|A|1530
4V8P|1|F1|C|1531
*
4V8P|1|F1|G|1539
4V8P|1|F1|U|1540
4V8P|1|F1|U|1541

Current chains

Chain F1

26S RRNA

Nearby chains

Chain EO

RPL19

Chain EQ

RPL17

Chain FB

RPL39