IL_4V8P_369

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CUAAG*CAAAAG

Length

11 nucleotides

Bulged bases

4V8P|1|F1|A|1613, 4V8P|1|F1|A|1614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95526.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V8P|1|F1|C|1558
4V8P|1|F1|U|1559
4V8P|1|F1|A|1560
4V8P|1|F1|A|1561
4V8P|1|F1|G|1562
*
4V8P|1|F1|C|1610
4V8P|1|F1|A|1611
4V8P|1|F1|A|1612
4V8P|1|F1|A|1613
4V8P|1|F1|A|1614
4V8P|1|F1|G|1615

Current chains

Chain F1

26S RRNA

Nearby chains

Chain E2

5.8S ribosomal RNA; 5.8S rRNA

Chain EA

RPL8

Chain FA

RIBOSOMAL PROTEIN L37

Chain FB

RPL39

Chain FL

RPL34