IL_4V8P_379

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UGAAAUU*AGAGAUA

Length

14 nucleotides

Bulged bases

4V8P|1|F1|U|1740, 4V8P|1|F1|A|1753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17283.1

Basepair signature

cWW-tSH-tSH-tHS-tSS-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4V8P|1|F1|U|1735
4V8P|1|F1|G|1736
4V8P|1|F1|A|1737
4V8P|1|F1|A|1738
4V8P|1|F1|A|1739
4V8P|1|F1|U|1740
4V8P|1|F1|U|1741
*
4V8P|1|F1|A|1751
4V8P|1|F1|G|1752
4V8P|1|F1|A|1753
4V8P|1|F1|G|1754
4V8P|1|F1|A|1755
4V8P|1|F1|U|1756
4V8P|1|F1|A|1757

Current chains

Chain F1

26S RRNA

Nearby chains

Chain EO

RPL19

Chain EY

RPL37A

Chain FG

RPL30

Chain FN

RPL27