IL_4V8P_392

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57391.1

Basepair signature

cWW-cWW-L-R-R-R-L-L-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V8P|1|F1|U|2206
4V8P|1|F1|C|2207
4V8P|1|F1|A|2208
4V8P|1|F1|A|2209
4V8P|1|F1|A|2210
4V8P|1|F1|G|2211
4V8P|1|F1|U|2212
*
4V8P|1|F1|A|2223
4V8P|1|F1|A|2224
4V8P|1|F1|C|2225
4V8P|1|F1|C|2226
4V8P|1|F1|A|2227
4V8P|1|F1|A|2228
4V8P|1|F1|G|2229

Current chains

Chain F1

26S RRNA

Nearby chains

Chain EA

RPL8

Chain FC

60S RIBOSOMAL PROTEIN L36A

Chain FQ

60S RIBOSOMAL PROTEIN L36