IL_4V8P_412

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35765.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

58

Unit IDs

4V8P|1|F1|C|2823
4V8P|1|F1|C|2824
4V8P|1|F1|A|2825
4V8P|1|F1|A|2826
4V8P|1|F1|G|2827
*
4V8P|1|F1|C|2837
4V8P|1|F1|G|2838
4V8P|1|F1|A|2839
4V8P|1|F1|C|2840
4V8P|1|F1|G|2841

Current chains

Chain F1

26S RRNA

Nearby chains

Chain EH

60S RIBOSOMAL PROTEIN L10

Chain FK

UBIQUITIN-60S RIBOSOMAL PROTEIN L40