IL_4V8P_422

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UAAAUA*UGAAG

Length

11 nucleotides

Bulged bases

4V8P|1|F1|A|3045, 4V8P|1|F1|U|3047

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73934.1

Basepair signature

cWW-R-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4V8P|1|F1|U|3043
4V8P|1|F1|A|3044
4V8P|1|F1|A|3045
4V8P|1|F1|A|3046
4V8P|1|F1|U|3047
4V8P|1|F1|A|3048
*
4V8P|1|F1|U|3073
4V8P|1|F1|G|3074
4V8P|1|F1|A|3075
4V8P|1|F1|A|3076
4V8P|1|F1|G|3077

Current chains

Chain F1

26S RRNA

Nearby chains

Chain EB

RIBOSOMAL PROTEIN L3

Chain ET

RPL24

Chain EW

60S RIBOSOMAL PROTEIN L31