IL_4V8P_424

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

4V8P|1|F1|A|3119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95526.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V8P|1|F1|A|3092
4V8P|1|F1|U|3093
4V8P|1|F1|U|3094
4V8P|1|F1|A|3095
4V8P|1|F1|U|3096
*
4V8P|1|F1|A|3116
4V8P|1|F1|G|3117
4V8P|1|F1|A|3118
4V8P|1|F1|A|3119
4V8P|1|F1|U|3120

Current chains

Chain F1

26S RRNA

Nearby chains

Chain EE

60S RIBOSOMAL PROTEIN L9

Chain EI

60S RIBOSOMAL PROTEIN L13A

Chain FK

UBIQUITIN-60S RIBOSOMAL PROTEIN L40