IL_4V8P_438

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

4V8P|1|G2|U|91

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_438 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.187

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

4V8P|1|G2|G|71
4V8P|1|G2|C|72
*
4V8P|1|G2|G|90
4V8P|1|G2|U|91
4V8P|1|G2|C|92

Current chains

Chain G2

5.8S RRNA

Nearby chains

Chain GS

RPL26

Chain GU

RPL35

Chain H1

Large subunit ribosomal RNA; LSU rRNA

Chain HA

RIBOSOMAL PROTEIN L37

Chain HB

RPL39