IL_4V8P_447

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_447 not in the Motif Atlas

Homologous match to IL_5TBW_004

Geometric discrepancy: 0.1492

The information below is about IL_5TBW_004

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

4V8P|1|H1|C|25
4V8P|1|H1|C|26
*
4V8P|1|H1|G|54
4V8P|1|H1|A|55
4V8P|1|H1|G|56

Current chains

Chain H1

26S RRNA

Nearby chains

Chain G2

5.8S ribosomal RNA; 5.8S rRNA

Chain GC

RPL4

Chain GL

RIBOSOMAL PROTEIN L15

Chain GU

RPL35

Chain HA

RIBOSOMAL PROTEIN L37

Chain HU

RPL13