IL_4V8P_451
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GAAG*CAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_451 not in the Motif Atlas
- Geometric match to IL_4LFB_060
- Geometric discrepancy: 0.2168
- The information below is about IL_4LFB_060
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
4V8P|1|H1|G|125
4V8P|1|H1|A|126
4V8P|1|H1|A|127
4V8P|1|H1|G|128
*
4V8P|1|H1|C|138
4V8P|1|H1|A|139
4V8P|1|H1|A|140
4V8P|1|H1|C|141
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain G2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain GF
- RPL7A
- Chain GL
- RIBOSOMAL PROTEIN L15
- Chain GR
- RPL23A
- Chain GU
- RPL35
Coloring options: