IL_4V8P_462

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GCAUAAG*UGCUAC

Length

13 nucleotides

Bulged bases

4V8P|1|H1|C|525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8P|1|H1|G|449
4V8P|1|H1|C|450
4V8P|1|H1|A|451
4V8P|1|H1|U|452
4V8P|1|H1|A|453
4V8P|1|H1|A|454
4V8P|1|H1|G|455
*
4V8P|1|H1|U|523
4V8P|1|H1|G|524
4V8P|1|H1|C|525
4V8P|1|H1|U|526
4V8P|1|H1|A|527
4V8P|1|H1|C|528

Current chains

Chain H1

26S RRNA

Nearby chains

Chain HE

RPL6

Chain HO

RPL28