IL_4V8P_465

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UC*GAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_465 not in the Motif Atlas

Geometric match to IL_1I6U_002

Geometric discrepancy: 0.3061

The information below is about IL_1I6U_002

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

4V8P|1|H1|U|469
4V8P|1|H1|C|470
*
4V8P|1|H1|G|507
4V8P|1|H1|A|508
4V8P|1|H1|A|509
4V8P|1|H1|A|510

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GC

RPL4

Chain HO

RPL28