IL_4V8P_470

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_470 not in the Motif Atlas

Geometric match to IL_4WF9_034

Geometric discrepancy: 0.1607

The information below is about IL_4WF9_034

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V8P|1|H1|G|555
4V8P|1|H1|A|556
4V8P|1|H1|U|557
*
4V8P|1|H1|A|610
4V8P|1|H1|A|611
4V8P|1|H1|C|612

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GC

RPL4

Chain GV

60S RIBOSOMAL PROTEIN L7

Chain HH

RPL35A