IL_4V8P_477
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CC*GAG
- Length
- 5 nucleotides
- Bulged bases
- 4V8P|1|H1|A|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_477 not in the Motif Atlas
- Homologous match to IL_5TBW_024
- Geometric discrepancy: 0.1575
- The information below is about IL_5TBW_024
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
4V8P|1|H1|C|776
4V8P|1|H1|C|777
*
4V8P|1|H1|G|804
4V8P|1|H1|A|805
4V8P|1|H1|G|806
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain GK
- 60S RIBOSOMAL PROTEIN L27A
- Chain GN
- RPL18
- Chain HT
- RPL29
Coloring options: