3D structure

PDB id
4V8P (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
CC*GAG
Length
5 nucleotides
Bulged bases
4V8P|1|H1|A|805
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V8P_477 not in the Motif Atlas
Homologous match to IL_5TBW_024
Geometric discrepancy: 0.1575
The information below is about IL_5TBW_024
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

4V8P|1|H1|C|776
4V8P|1|H1|C|777
*
4V8P|1|H1|G|804
4V8P|1|H1|A|805
4V8P|1|H1|G|806

Current chains

Chain H1
26S RRNA

Nearby chains

Chain GK
60S RIBOSOMAL PROTEIN L27A
Chain GN
RPL18
Chain HT
RPL29

Coloring options:


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