IL_4V8P_484

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAUA*UUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_484 not in the Motif Atlas

Homologous match to IL_8C3A_034

Geometric discrepancy: 0.1239

The information below is about IL_8C3A_034

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4V8P|1|H1|G|894
4V8P|1|H1|A|895
4V8P|1|H1|U|896
4V8P|1|H1|A|897
*
4V8P|1|H1|U|913
4V8P|1|H1|U|914
4V8P|1|H1|C|915

Current chains

Chain H1

26S RRNA

Nearby chains

Chain HA

RIBOSOMAL PROTEIN L37