IL_4V8P_488

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_488 not in the Motif Atlas

Homologous match to IL_5TBW_035

Geometric discrepancy: 0.1128

The information below is about IL_5TBW_035

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

4V8P|1|H1|C|994
4V8P|1|H1|A|995
*
4V8P|1|H1|U|1138
4V8P|1|H1|A|1139
4V8P|1|H1|G|1140

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GK

60S RIBOSOMAL PROTEIN L27A

Chain GN

RPL18

Chain GP

60S RIBOSOMAL PROTEIN L21

Chain HT

RPL29

Chain HU

RPL13