IL_4V8P_503
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CGCCCAAA*UG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8P_503 not in the Motif Atlas
- Geometric match to IL_7RQB_037
- Geometric discrepancy: 0.1068
- The information below is about IL_7RQB_037
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_15861.7
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
4V8P|1|H1|C|1200
4V8P|1|H1|G|1201
4V8P|1|H1|C|1202
4V8P|1|H1|C|1203
4V8P|1|H1|C|1204
4V8P|1|H1|A|1205
4V8P|1|H1|A|1206
4V8P|1|H1|A|1207
*
4V8P|1|H1|U|1352
4V8P|1|H1|G|1353
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain GI
- 60S RIBOSOMAL PROTEIN L13A
- Chain GV
- 60S RIBOSOMAL PROTEIN L7
- Chain HH
- RPL35A
- Chain HX
- RPL18A
Coloring options: