IL_4V8P_504

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AUG*UU

Length

5 nucleotides

Bulged bases

4V8P|1|H1|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_504 not in the Motif Atlas

Homologous match to IL_8C3A_053

Geometric discrepancy: 0.1884

The information below is about IL_8C3A_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V8P|1|H1|A|1207
4V8P|1|H1|U|1208
4V8P|1|H1|G|1209
*
4V8P|1|H1|U|1351
4V8P|1|H1|U|1352

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GI

60S RIBOSOMAL PROTEIN L13A

Chain GV

60S RIBOSOMAL PROTEIN L7

Chain HF

RPL14

Chain HH

RPL35A

Chain HX

RPL18A