IL_4V8P_511

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

4V8P|1|H1|U|1425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8P_511 not in the Motif Atlas

Homologous match to IL_5TBW_060

Geometric discrepancy: 0.4132

The information below is about IL_5TBW_060

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4V8P|1|H1|U|1424
4V8P|1|H1|U|1425
4V8P|1|H1|G|1426
*
4V8P|1|H1|U|1437
4V8P|1|H1|A|1438

Current chains

Chain H1

26S RRNA

Nearby chains

Chain G2

5.8S ribosomal RNA; 5.8S rRNA

Chain GX

60S RIBOSOMAL PROTEIN L32